PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009144966.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 340aa    MW: 38635.5 Da    PI: 6.5715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009144966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05172191120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_009144966.1 172 FSCPLCFKTFNRYNNMQMHM 191
                     89*****************9 PP

2zf-C2H213.10.00029256278123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  XP_009144966.1 256 FACRRCGKAFAVKGDWRTHEKNC 278
                     78*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-5172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66172199IPR007087Zinc finger, C2H2
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5242276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-6242276No hitNo description
PROSITE profilePS501578.767256276IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSNPACSNLF NNGFDNTNFN YSTSLSYIYN SQNSFYHPDT TNPNYMSPTT TTSTFPNSPP  60
LREALPLLSL SPIRHQEQHG QPCFLNTDNT TSSNFHDVTV DLHLGLPNYG DGGSYIAPEA  120
TTEEQDQDHD QEVEVTVESH LHDDDDHHED LYRGHHYWIP TPAQILIGPT QFSCPLCFKT  180
FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCFC CAPGCKNNID HPRAKPLKDF  240
RTLQTHYKRK HGSRPFACRR CGKAFAVKGD WRTHEKNCGK LWYCSCGSDF KHKRSLKDHV  300
KAFGNGHAPC GIDSFGGDHE DYYEAASDIE QQDDCNNNEC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144966.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLM4ENT00.0M4ENT0_BRARP; Uncharacterized protein
STRINGBra030450.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-179WIP domain protein 5